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Sequence alignment
Results: 764

#	Item
441	Syst. Biol. 63(1):31–54, 2014 © The Author(s[removed]Published by Oxford University Press, on behalf of the Society of Systematic Biologists. All rights reserved. For Permissions, please email: journals.permissions@oup Add to Reading List Source URL: pryerlab.biology.duke.edu Language: English - Date: 2014-01-10 01:22:33 Science Statistics Biology Substitution model Models of DNA evolution Molecular clock Akaike information criterion Maximum parsimony Sequence alignment Computational phylogenetics Bioinformatics Phylogenetics
442	Copyedited by: PSB BIOINFORMATICS MANUSCRIPT CATEGORY: ORIGINAL PAPER Add to Reading List Source URL: faculty.virginia.edu Language: English - Date: 2010-03-04 10:33:59 Protein structure Science Proteins Protein methods Proteomics Threading Rosetta@home Protein secondary structure Sequence alignment Bioinformatics Biology Chemistry
443	Sequence comparison using a relational database approach Andre Bergholz Institut fur Informatik Humboldt-Universitat zu Berlin Unter den Linden 6 D[removed]Berlin, Germany Add to Reading List Source URL: www.dbis.informatik.hu-berlin.de Language: English - Date: 2005-07-20 02:26:58 Computational science BLAST Smith–Waterman algorithm Sequence alignment Sequence analysis Nucleic acid sequence Sequence database STING DNA Bioinformatics Science Computational phylogenetics
444	Gathering Sequences: BLAST PRVA_MACFU PRVA_HUMAN PRVA_GERSP PRVA_MOUSE Add to Reading List Source URL: www.tcoffee.org Language: English - Date: 2009-10-25 19:29:52 Biology Sequence alignment Multiple sequence alignment BLAST BLOSUM Clustal Homology Computational phylogenetics Bioinformatics Science
445	Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments Add to Reading List Source URL: molevol.cmima.csic.es Language: English - Date: 2008-08-20 11:05:12 Biology Sequence alignment Multiple sequence alignment T-Coffee Clustal Phylo MUSCLE MAFFT Maximum parsimony Computational phylogenetics Science Bioinformatics
446	Sketch of the Blast Approach When comparing two sequences, the various versions of the Blast program perform some combination of the following steps. 1. “Word hits” are identified. By word we mean a contiguous segmen Add to Reading List Source URL: globin.cse.psu.edu Language: English - Date: 2001-09-18 09:36:52 BLAST Public domain software Computational science Smith–Waterman algorithm Position-specific scoring matrix Warren Gish Sequence alignment Science Bioinformatics Computational phylogenetics
447	Package ‘bios2mds’ July 2, 2014 Title From BIOlogical Sequences to MultiDimensional Scaling Version[removed]Date[removed]Author Julien Pele with Jean-Michel Becu, Herve Abdi, and Marie Chabbert Add to Reading List Source URL: cran.r-project.org Language: English - Date: 2014-07-02 11:21:40 Biology FASTA format FASTA Sequence alignment Multiple sequence alignment G protein-coupled receptor BLAST STING Substitution matrix Bioinformatics Science Computational phylogenetics
448	© 1999 Oxford University Press Nucleic Acids Research, 1999, Vol. 27, No[removed]–3910 Comparison of five methods for finding conserved sequences in multiple alignments of gene regulatory Add to Reading List Source URL: globin.cse.psu.edu Language: English - Date: 1999-11-15 15:31:58 Biology Genetics Sequence alignment Multiple sequence alignment Consensus sequence Conserved sequence Nucleic acid sequence Sequence motif Phylo Bioinformatics Computational phylogenetics Science
449	RC454 USERS GUIDE General Description RC454 is a tool to clean 454 reads based on their alignment to a reference consensus assembly. The correction process is aggressive, and as such requires an assembly that is high Add to Reading List Source URL: www.broadinstitute.org Language: English - Date: 2012-11-08 17:47:42 FASTQ format FASTA format Sequence assembly FASTA Perl DNA sequencing 454 Life Sciences Diff Smith–Waterman algorithm Bioinformatics Computing Software
450	Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis Add to Reading List Source URL: molevol.cmima.csic.es Language: English - Date: 2008-08-20 11:05:11 Biology Genetics Sequence alignment BLOSUM Substitution matrix Phylogenetic tree Conserved sequence Phylo Nucleic acid sequence Bioinformatics Computational phylogenetics Science

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